All functions

BioInstaller

This package can be used to install and download massive bioinformatics analysis softwares and databases, such as NGS reads mapping tools with its required databases.

change.info()

Update biologly softwares infomation of system

craw.all.versions()

A function can be used to craw all source code from nongithub.cfg stored information

del.info()

Delete biologly softwares infomation of system

docker.pull()

Use docker to pull image

docker.search()

Search softwares docker infomation in BioInstaller docker database

get.info()

Show biologly softwares infomation of system

get.meta()

Get meta information of BioInstaller collected sources, such as database, GitHub source, non-GitHub source, web source

get.meta.files()

Get all BioInstaller meta files path, such as database, GitHub source, non-GitHub source, web source

install.bioinfo()

Download and install biology software or database

install.github()

Install or download softwares from Github

install.nongithub()

Install or download softwares from non-Github Web site

is.biosoftwares.db.active()

Test active configuration file

set.biosoftwares.db()

Set BIO_SOFWARES_DB_ACTIVE as the BioInstaller db

show.installed()

Show all installed bio-softwares in system